Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948976.1_cds_XP_016490064.1_80528
CDS Infomation

[gene=LOC107809882] [db_xref=GeneID:107809882] [protein=proton pump-interactor 1-like] [protein_id=XP_016490064.1] [location=complement(join(224798..225109,225205..225729,225805..225903,226270..226464,226574..226753,226866..227060,227407..227772))] [gbkey=CDS]
Sequence

ATGGGTAGAGACATGGAATCTCAGTTAGCTCTTGTTTCAGTTGAAACTGGAACTGAACAG
AAAAACCTTCCGAAGGAAAATAAAAAAAAGAATCATGGCGTAGGGGTTAATGAGACTATA
AATTTTGGCTCGCATGGTACTCAAGAAACAATTAAGGAGGCAGGGAAAAAAGTTCCTGTG
AGCAGCCTCCGGAAGGATGCAGTTGACGACTGGCCTGCACCTAAGCAGATACATTCTTTC
TATATTGTTAGATATCGAAGATTTGAAGACCAAAAACTCAAGGCCAAATTTGATCTGGCA
GAAAAAGAGCTACAGAAAATGAACAAAGCAAGATCTCAGGTTATTGAAAAATTGAAGGCC
ATAAGGGCAGAACGATCAAAGTTGATAGACCAAAGGAAATCTGTGAGTGCTGAGAATCAG
GAGTTTTGGGCAGTAATTGGTGAGAAAAGAAAGGAAATGGAACCTCTGCAGGATGCCCTG
GGCAAGCTCCGTGGTCCTAGGAAAGCCGGCAGAGAAGGGGGTTCTAGTCTGTGTTCATCT
GAGGAGGAGCTTGACGATCTCATTAAGAGTCTGCAGTACCGCATTCAGCATGAAAGCATT
CCTCTGACTGAAGAGAAGCAAATTCTGCGAGAAATTAAACGACTTGAAGGAACAAGGGGA
GAGGTAAGAGACCATATGGCTATGAGGGCACAGATTCAGGATTCAATAGGTGAAAAAGAA
ACAATACAAAAGCAGGTTAAGGCTATAAGTGGTAACCTTGATGGGGTTCGTAAGGAGCAA
CAGGTGGTTAAGGCCAAGCTTAAGCAACTAGATGATCAACTCGATGCCAATACCAATCAG
ATTAAGTTATTGGATGAGGAATTGAAGGAAATAACAAAGAAGAGGGACACAGCTTTTGCA
CATGTTCTGGAATTGAGAAAACACCGTGAAGAAGGGAATGCTCCATTCTACCAAAACAAT
GCACTGTTGCAAAAAGCAAAATTGCTAGCAGATAAGAAGGATGTTGAAGCCCTCAAAGAG
CTCTCACTTACAGAGGTCGATAAATTCATTTCCCTTTGGAGTGGCAGTAAGCCATTTAGG
GATGATTATGAGAGGAGAATTTTAACAGCACTTGATATTAGGCAGTTGAGCCGAGATGGC
AGGATGAGGAACCCCGACGAAAAGCCTCTAGTATTACCAGCGGCGCAGACTGTTTCCCAA
TCTGAGATTGTTGAAAGAACTAATGCGAAACCATTAAAGGAAGAATCAGCGCCTCCTGCT
CAGAAATTACAGAAAGAGAAGAACAACAAGCAGCCAAAAGAAGCAAGTAGCAAAGTTACA
GAAAGTAGCACGAAAAAGTACATCTTTGATATTGAAGAGGAGATCCATGGTTTAGAAAAG
CAACCCAAGGATATGAATCCCAAGGGCAAGGGAGTTGATGAAGCGAAATTGAGGGAGATG
AAGAGAGAGGAGGAGATAGCAAAAAATAAGAAGGCAATGGAGAGGAAGAAGAAGTTGGCC
GAGAAAGCAGCTGCCAAAGCAGTAATAAAAGCTCAAAAAGAAGCTGAAAAGAAGCTCAAG
GAACGTGAGAAGAAGGCGAAGAAGAAAACTGGAGCATCTGTTCCTGCTGAGGGATCTACT
GAGGAACCAACTGAAACATCTGCAGAGGTTGCTGAGGAAGAGAAGATTGAGGAAAAGGTT
GAAACATCAGTTGCGCCTAAGGTTAAGGCGCCGAAAGAGAATACTATCAGGAATCGACCA
AAACGTGCTAAGGGCATGGAAATTCCTAAAACTATACTGAAGCGGAAAAATGCAATGAAC
TATCGGCTATGGGCTGCTCCTGCTGCTCTCGTAGTTCCACTACTACTAGTAGCATACAAG
TATCTTATCTAG

Peptide Sequence

PEP ID

XP_016490064.1
PEP Infomation

PREDICTED: proton pump-interactor 1-like [Nicotiana tabacum]
Sequence

MGRDMESQLALVSVETGTEQKNLPKENKKKNHGVGVNETINFGSHGTQETIKEAGKKVPV
SSLRKDAVDDWPAPKQIHSFYIVRYRRFEDQKLKAKFDLAEKELQKMNKARSQVIEKLKA
IRAERSKLIDQRKSVSAENQEFWAVIGEKRKEMEPLQDALGKLRGPRKAGREGGSSLCSS
EEELDDLIKSLQYRIQHESIPLTEEKQILREIKRLEGTRGEVRDHMAMRAQIQDSIGEKE
TIQKQVKAISGNLDGVRKEQQVVKAKLKQLDDQLDANTNQIKLLDEELKEITKKRDTAFA
HVLELRKHREEGNAPFYQNNALLQKAKLLADKKDVEALKELSLTEVDKFISLWSGSKPFR
DDYERRILTALDIRQLSRDGRMRNPDEKPLVLPAAQTVSQSEIVERTNAKPLKEESAPPA
QKLQKEKNNKQPKEASSKVTESSTKKYIFDIEEEIHGLEKQPKDMNPKGKGVDEAKLREM
KREEEIAKNKKAMERKKKLAEKAAAKAVIKAQKEAEKKLKEREKKAKKKTGASVPAEGST
EEPTETSAEVAEEEKIEEKVETSVAPKVKAPKENTIRNRPKRAKGMEIPKTILKRKNAMN
YRLWAAPAALVVPLLLVAYKYLI

Transcript Sequence

Gene sequence data has not been registered.